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Displacement of the Gent/1999 human-like swine H1N2 influenza A virus lineage by novel H1N2 reassortants in Germany.

Identifieur interne : 000003 ( Main/Exploration ); précédent : 000002; suivant : 000004

Displacement of the Gent/1999 human-like swine H1N2 influenza A virus lineage by novel H1N2 reassortants in Germany.

Auteurs : Roland Zell [Allemagne] ; Marco Groth [Allemagne] ; Andi Krumbholz [Allemagne] ; Jeannette Lange [Allemagne] ; Anja Philipps [Allemagne] ; Ralf Dürrwald [Allemagne]

Source :

RBID : pubmed:31696308

Descripteurs français

English descriptors

Abstract

A swine influenza survey was conducted between 2003 and 2015 in Germany. During this period, 8122 snout swabs or other respiratory specimens from pigs of 5178 herds, mainly from Germany, were investigated for the presence of swine influenza A virus (S-IAV). In total, 1310 S-IAV isolates were collected. Of this collection, the complete genome of 267 H1N2 S-IAV isolates was sequenced and phylogenetically analyzed. The data demonstrate the incursion of human-like swine H1N2 viruses (Gent/1999-like) in 2000 and prevalent circulation until 2010. From 2008 onward, a sustained and broad change of the genetic constellation of the swine H1N2 subtype commenced. The Gent/1999-like swine H1N2 viruses ceased and several new swine H1N2 reassortants emerged and became prevalent in Germany. Of these, the upsurge of the Diepholz/2008-like, Emmelsbuell/2009-like and Papenburg/2010-like viruses is notable. The data reveal the importance of reassortment events in S-IAV evolution. The strong circulation of S-IAV of different lineages in the swine population throughout the year underlines that pigs are important reservoir hosts.

DOI: 10.1007/s00705-019-04457-w
PubMed: 31696308


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Le document en format XML

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<div type="abstract" xml:lang="en">A swine influenza survey was conducted between 2003 and 2015 in Germany. During this period, 8122 snout swabs or other respiratory specimens from pigs of 5178 herds, mainly from Germany, were investigated for the presence of swine influenza A virus (S-IAV). In total, 1310 S-IAV isolates were collected. Of this collection, the complete genome of 267 H1N2 S-IAV isolates was sequenced and phylogenetically analyzed. The data demonstrate the incursion of human-like swine H1N2 viruses (Gent/1999-like) in 2000 and prevalent circulation until 2010. From 2008 onward, a sustained and broad change of the genetic constellation of the swine H1N2 subtype commenced. The Gent/1999-like swine H1N2 viruses ceased and several new swine H1N2 reassortants emerged and became prevalent in Germany. Of these, the upsurge of the Diepholz/2008-like, Emmelsbuell/2009-like and Papenburg/2010-like viruses is notable. The data reveal the importance of reassortment events in S-IAV evolution. The strong circulation of S-IAV of different lineages in the swine population throughout the year underlines that pigs are important reservoir hosts.</div>
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<AbstractText>A swine influenza survey was conducted between 2003 and 2015 in Germany. During this period, 8122 snout swabs or other respiratory specimens from pigs of 5178 herds, mainly from Germany, were investigated for the presence of swine influenza A virus (S-IAV). In total, 1310 S-IAV isolates were collected. Of this collection, the complete genome of 267 H1N2 S-IAV isolates was sequenced and phylogenetically analyzed. The data demonstrate the incursion of human-like swine H1N2 viruses (Gent/1999-like) in 2000 and prevalent circulation until 2010. From 2008 onward, a sustained and broad change of the genetic constellation of the swine H1N2 subtype commenced. The Gent/1999-like swine H1N2 viruses ceased and several new swine H1N2 reassortants emerged and became prevalent in Germany. Of these, the upsurge of the Diepholz/2008-like, Emmelsbuell/2009-like and Papenburg/2010-like viruses is notable. The data reveal the importance of reassortment events in S-IAV evolution. The strong circulation of S-IAV of different lineages in the swine population throughout the year underlines that pigs are important reservoir hosts.</AbstractText>
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<Affiliation>Section of Experimental Virology, Institute for Medical Microbiology, Jena University Hospital, Friedrich Schiller University Jena, 07745, Jena, Germany.</Affiliation>
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<AffiliationInfo>
<Affiliation>Thermo Fisher Scientific GENEART GmbH, 93059, Regensburg, Germany.</Affiliation>
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<Affiliation>Section of Experimental Virology, Institute for Medical Microbiology, Jena University Hospital, Friedrich Schiller University Jena, 07745, Jena, Germany.</Affiliation>
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<AffiliationInfo>
<Affiliation>Robert Koch Institute, 13353, Berlin, Germany.</Affiliation>
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<Grant>
<GrantID>01KI7142</GrantID>
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<Grant>
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<Agency>Bundesministerium für Bildung und Forschung</Agency>
<Country></Country>
</Grant>
<Grant>
<GrantID>01KI1006J</GrantID>
<Agency>Bundesministerium für Bildung und Forschung</Agency>
<Country></Country>
</Grant>
<Grant>
<GrantID>#259949</GrantID>
<Agency>European Union FP7-Influenza-2010 ESNIP3</Agency>
<Country></Country>
</Grant>
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<PublicationType UI="D016428">Journal Article</PublicationType>
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<ArticleDate DateType="Electronic">
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<Country>Austria</Country>
<MedlineTA>Arch Virol</MedlineTA>
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<DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
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<DescriptorName UI="D015995" MajorTopicYN="N">Prevalence</DescriptorName>
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<DescriptorName UI="D016865" MajorTopicYN="N">Reassortant Viruses</DescriptorName>
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<DescriptorName UI="D013552" MajorTopicYN="N">Swine</DescriptorName>
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<PubMedPubDate PubStatus="accepted">
<Year>2019</Year>
<Month>10</Month>
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<PubMedPubDate PubStatus="entrez">
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</History>
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<ArticleId IdType="doi">10.1007/s00705-019-04457-w</ArticleId>
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</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>Allemagne</li>
</country>
<region>
<li>Berlin</li>
<li>Schleswig-Holstein</li>
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<li>Berlin</li>
<li>Kiel</li>
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<country name="Allemagne">
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<name sortKey="Zell, Roland" sort="Zell, Roland" uniqKey="Zell R" first="Roland" last="Zell">Roland Zell</name>
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<name sortKey="Durrwald, Ralf" sort="Durrwald, Ralf" uniqKey="Durrwald R" first="Ralf" last="Dürrwald">Ralf Dürrwald</name>
<name sortKey="Groth, Marco" sort="Groth, Marco" uniqKey="Groth M" first="Marco" last="Groth">Marco Groth</name>
<name sortKey="Krumbholz, Andi" sort="Krumbholz, Andi" uniqKey="Krumbholz A" first="Andi" last="Krumbholz">Andi Krumbholz</name>
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<name sortKey="Lange, Jeannette" sort="Lange, Jeannette" uniqKey="Lange J" first="Jeannette" last="Lange">Jeannette Lange</name>
<name sortKey="Lange, Jeannette" sort="Lange, Jeannette" uniqKey="Lange J" first="Jeannette" last="Lange">Jeannette Lange</name>
<name sortKey="Philipps, Anja" sort="Philipps, Anja" uniqKey="Philipps A" first="Anja" last="Philipps">Anja Philipps</name>
<name sortKey="Philipps, Anja" sort="Philipps, Anja" uniqKey="Philipps A" first="Anja" last="Philipps">Anja Philipps</name>
</country>
</tree>
</affiliations>
</record>

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